Education

Ph.D. in Computational Sciences, Dalian University Of Technology, 2010-2013

M.Phil. in Mathematics, Quaid-i-Azam University Islamabad, Pakistan, 2008-2010

M.S. in Mathematics, Gomal University Dera Ismail Khan, Khyber-Pakhtoonkhwa, Pakistan, 2005-2007

B.S. in Mathematics and Physics, Gomal University Dera Ismail Khan, Khyber Pakhtoonkhwa, Pakistan, 2003-2005

 

Research Area

Detection of viral sequences from genome sequencing data and RNA-Seq

Machine-learning for predicting the functionality of genetic mutations

Machine-learning for aternative trasncrpits and samll RNA's in Archaea

Machine learning

Deep learning

Optimizations

 

 

Research Summary

Detection of viral sequences from different tumors samples.

Accurate detection of virus based on RNA-Seq. 

 

  

 

 

Publications

 

Atlas Khan, RZN Vencio and Tie Koide, Intragenic differential expression in archea transcriptomes revealed by computational analysis of tiling microarrays” under review, 2016).

Shah, Tariq, Atlas Khan, and A. A. Andrade. "Encoding through generalized polynomial codes." Computational & Applied Mathematics 30.2 (2011): 349-366.

Atlas Khan, Jie Yang, and Wei Wu. "Double parallel feedforward neural network based on extreme learning machine with L 1/2 regularizer."Neurocomputing 128 (2014): 113-118.

Atlas Khan, et al. "Convergence Analysis of a New Self Organizing Map Based Optimization (SOMO) Algorithm." Cognitive Computation 7.4 (2015): 477-486.

Shah, Tariq, Atlas Khan, and Antonio Aparecido de Andrade. "Constructions of codes through the semigroup ring and encoding." Computers & Mathematics with Applications 62.4 (2011): 1645-1654.

Wu, Wei, and Atlas Khan. "SOMO-m optimization algorithm with multiple winners." Discrete Dynamics in Nature and Society 2012 (2012).

Shah, Tariq, Atlas Khan, and Antonio Aparecido de Andrade. "Constructions of codes through the semigroup ring and encoding." Computers & Mathematics with Applications 62.4 (2011): 1645-1654.

de Andrade, Antonio Aparecido, Tariq Shah, and Atlas Khan. "A note on linear codes over semigroup rings." Trends in Applied and Computational Mathematics 12.2 (2011): 79-89.

Andrade, Antonio Aparecido de, Tariq Shah, and Atlas Khan. "Goppa codes through generalized polynomials and its decoding principle." International Journal of Applied Mathematics (2010): 517-526.

Wei, Wu, and Atlas Khan. "MaxMin-SOMO: an SOM optimization algorithm for simultaneously finding maximum and minimum of a function."International Symposium on Neural Networks. Springer Berlin Heidelberg, 2012.

de Andrade, Antonio Aparecido, Tariq Shah, and Atlas Khan. "Decoding Procedure for BCH, Alternant and Goppa Codes defined over Semigroup Ring."

Shah, Tariq, Atlas Khan, and Antonio Aparecido de Andrade. "Ascending chain of semigroup rings and encoding."

Atlas Khan and W Wei, “Convergence of MaxMin-SOMO: An SOM optimization algorithm for simultaneously finding maximum and minimum of a function,” (Accepted for publication in International Journal of Automation and Computing (IJAC), (2015).

Atlas Khan, W. Wu and S.U. Khan, “Cyclic DNA Codes through B[X; 1/2Z0],” International Journal of Research and Reviews in Computer Science (IJRRCS) Vol. 2, No. 4, , ISSN: 2079-2557 Aug. 2011.

A. A. Andrade, T. Shah and A. Khan, “Constructions of cyclic DNA codes through some monoid rings”(Submitted to Pakistan academy of sciences).

A. Khan, “Cyclic codes through a semigroup ring II,”AIP Conf.Proc.Vol.1309, 597-599, 2010.

Atlas Khan and RZN. Vêncio “Prediction of RNA-protein binding Interactions in H. salinarum using machine learning techniques”, Biology of bacterial non coding RNAS (EMBO), March 4-9 2014, Bernal, Argentina (poster).

Atlas Khan and RZN Vêncio “Prediction of RNA-RNA interactions in H. salinarum by using Self organizing map (SOM)”, Bio Vision, The world science fourm, Lyun, France (poster).

Atlas Khan and RZN. Vêncio “The non-coding RNA in H. salinarum by using self-organizing map (SOM)” X-Meeting on Bioinfomratics with BSB and SoiBio, October 28-30, 2014, Belo Horizonte, Brazil (poster).