Our Software

We develop software tools for genomics

w4CSeq

Analysis of chromosome conformation capture combined with high-throughput sequencing (4C-seq)

HadoopCNV

We leverage big data framework for detection of structural variants from NGS data.

Phenolyzer

Phenolyzer

Phenotype/disease specific gene prioritization and gene network visualization.

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iCAGES

Identification of cancer driver genes/variants and optimal drug treatments from sequencing, expression and structural variants data.

Enlight Workflow

Enlight

Enlight is a web server that generates figures with epigenetic information and other biological annotations on top of GWAS results.

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wANNOVAR

wANNOVAR (web ANNOVAR) is a web application for annotating genetic variants with respect to disease phenotypes.

SeqMule Workflow

SeqMule

SeqMule is an automated pipeline to generate variant calls from FASTQ or BAM files, using more than 10 popular alignment and variant calling tools.

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SeqHBase

SeqHBase: A big data toolset for family-based sequencing data analysis.

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PennCNV-tumor

Detection of copy number alterations (CNAs) and estimation of stromal contamination on tumor samples

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PennCNV

Detection of copy number variations (CNVs) from various types of SNP arrays.

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ANNOVAR

Functional annotation of genetic variants from high-throughput sequencing data.